WebLab

EMBL to FASTA accepts an EMBL file as input and returns the entire DNA sequence in FASTA format. Use this program when you wish to quickly remove all of the non-DNA sequence information from an EMBL file.

Paste the contents of one or more EMBL files into the text area below. Input limit is 200000 characters.

ID   AF177870   standard; DNA; INV; 3123 BP.
XX
AC   AF177870;
XX
SV   AF177870.1
XX
DT   02-NOV-1999 (Rel. 61, Created)
DT   17-AUG-2000 (Rel. 64, Last updated, Version 2)
XX
DE   Caenorhabditis sp. CB5161 putative PP2C protein phosphatase FEM-2 (fem-2)
DE   gene, complete cds.
XX
KW   .
XX
OS   Caenorhabditis sp. CB5161
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-3123
RA   Stothard P.M., Hansen D., Pilgrim D.;
RT   "Isolation of PP2C sequences using degenerate-oligo PCR";
RL   Unpublished.
XX
RN   [2]
RP   1-3123
RA   Stothard P.M., Hansen D., Pilgrim D.;
RT   ;
RL   Submitted (17-AUG-1999) to the EMBL/GenBank/DDBJ databases.
RL   Biological Sciences, University of Alberta, Edmonton, AB T6G-2E9, Canada
XX
DR   SPTREMBL; Q9U6S2; Q9U6S2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3123
FT                   /db_xref="taxon:135651"
FT                   /organism="Caenorhabditis sp. CB5161"
FT                   /strain="CB5161"
FT   mRNA            join(<265..402,673..781,911..1007,1088..1215,1377..1573,
FT                   1866..2146,2306..2634,2683..>2855)
FT                   /gene="fem-2"
FT                   /product="putative FEM-2 protein phosphatase type 2C"
FT   CDS             join(265..402,673..781,911..1007,1088..1215,1377..1573,
FT                   1866..2146,2306..2634,2683..2855)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9U6S2"
FT                   /note="possible sex-determining protein"
FT                   /gene="fem-2"
FT                   /product="putative PP2C protein phosphatase FEM-2"
FT                   /protein_id="AAF04557.1"
FT                   /translation="MSDSLNHPSSSTVHADDGFEPPTSPEDNNKKPSLEQIKQEREALF
FT                   TDLFADRRRSARSVIEEAFQNELMSAEPVQPNVPNPHSIPIRFRHQPVAGPAHDVFGDA
FT                   VHSIFQKIMSRGVNADYSHWMSYWIALGIDKKTQMNYHMKPFCKDTYATEGSLEAKQTF
FT                   TDKIRSAVEEIIWKSAEYCDILSEKWTGIHVSADQLKGQRNKQEDRFVAYPNGQYMNRG
FT                   QSDISLLAVFDGHGGHECSQYAAAHFWEAWSDAQHHHSQDMKLDELLEKALETLDERMT
FT                   VRSVRESWKGGTTAVCCAVDLNTNQIAFAWLGDSPGYIMSNLEFRKFTTEHSPSDPEEC
FT                   RRVEEVGGQIFVIGGELRVNGVLNLTRALGDVPGRPMISNKPDTLLKTIEPADYLVLLA
FT                   CDGISDVFNTSDLYNLVQAFVNEYDVEDYHELARYICNQAVSAGSADNVTVVIGFLRPP
FT                   EDVWRVMKTDSDDEESELEEEDDNE"
XX
SQ   Sequence 3123 BP; 986 A; 605 C; 597 G; 935 T; 0 other;
gaacgcgaat gcctctctct ctttcgatgg gtatgccaat tgtccacatt cactcgtgtt        60
gcctcctctt tgccaacacg caagacacca gaaacgcgtc aaccaaagag aaaaagacgc       120
cgacaacggg cagcactcgc gagagacaaa ggttatcgcg ttgtgttatt atacattcgc       180
atccgggtca actttagtcc gttgaacatg cttcttgaaa acctagttct cttaaaataa       240
cgttttagaa gttttggtct tcagatgtct gattcgctaa atcatccatc gagttctacg       300
gtgcatgcag atgatggatt cgagccacca acatctccgg aagacaacaa caaaaaaccg       360
tctttagaac aaattaaaca ggaaagagaa gcgttgttta cggttagtta cctattagct       420
gcaagttttg aaaaagcgga atctgtaaaa agcggaatct gtaaaaaaaa catctaagga       480
ataattctga aaagaaaaag tttctaaatg ttaatcggaa tccaattttt atgaaattat       540
ttaaaaaaaa actaaaatta gtttctaaaa aatttttcta aagtaattgg accatgtgaa       600
ggtacaccca cttgttccaa tatgccatat ctaactgtaa aataatttga ttctcatgag       660
aatatttttc aggatctatt cgcagatcgt cgacgaagcg ctcgttctgt gattgaagaa       720
gctttccaaa acgaactcat gagtgctgaa ccagtccagc caaacgtgcc gaatccacat       780
tgtgagttgg aaatttttat ttgataacca agagaaaaaa agttctacct ttttttcaaa       840
aacctttcca aaaatgattc catctgatat aggattaaga aaaatatttt ccgaaatctc       900
tgcttttcag cgattcccat tcgtttccgt catcaaccag ttgctggacc tgctcatgat       960
gttttcggag acgcggtgca ttcaattttt caaaaaataa tgtccaggta tacactattt      1020
ttgcatattt ttcttgccaa atttggtcaa aaaccgtagt acaacccaaa aagtttcttc      1080
atttcagagg agtgaacgcg gattatagtc attggatgtc atattggatc gcgttgggaa      1140
tcgacaaaaa aacacaaatg aactatcata tgaaaccgtt ttgcaaagat acttatgcaa      1200
ctgaaggctc cttaggtagg ttagtctttt ctaggcacag aagagtgaga aaattctaaa      1260
tttctgagca gtctgctttt tgttttcctt gagtttttac ttaaagctct taaaagaaat      1320
ctaggcgtga agttcgagcc ttgtaccata ccacaacagc attccaaatg ttacagaagc      1380
gaaacaaaca tttactgata aaatcaggtc agctgttgag gaaattatct ggaagtccgc      1440
tgaatattgt gatattctta gcgagaagtg gacaggaatt catgtgtcgg ccgaccaact      1500
gaaaggtcaa agaaataagc aagaagatcg ttttgtggct tatccaaatg gacaatacat      1560
gaatcgtgga caggttagtg cgaatcgggg actcaagatt tactgaaata gtgaagagaa      1620
aacaaaagaa aactatattt tcaaaaaaaa tgagaactct aataaacaga atgaaaaaca      1680
ttcaaagcta cagtagtatt tccagctgga gtttccagag ccaaaaaaat gcgagtatta      1740
ctgtagtttt gaaattggtt tctcacttta cgtacgattt tttgattttt ttttcagact      1800
cttcatatga aaaaaaatca tgttttctcc tttacaagat ttttttgatc tcaaaacatt      1860
tccagagtga catttcactt cttgcggtgt tcgatgggca tggcggacac gagtgctctc      1920
aatatgcagc tgctcatttc tgggaagcat ggtccgatgc tcaacatcat cattcacaag      1980
atatgaaact tgacgaactc ctagaaaagg ctctagaaac attggacgaa agaatgacag      2040
tcagaagtgt tcgagaatct tggaaaggtg gaaccactgc tgtctgctgt gctgttgatt      2100
tgaacactaa tcaaatcgca tttgcctggc ttggagattc accagggtaa tcaatttttt      2160
tttagttttt ggaactttac gtcccgaaaa attattcctt tatcacctaa ttcctacagt      2220
aacccaagct ccgaattaaa taaagttaaa gcgtggtata cacataaaaa taagaaaaaa      2280
ttgttcatga aatccatttt tccagttaca tcatgtcaaa cttggagttc cgcaaattca      2340
ctactgaaca ctccccgtct gacccggagg aatgtcgacg agtcgaagaa gtcggtggcc      2400
agatttttgt gatcggtggt gagctccgtg tgaatggagt actcaacctg acgcgagcac      2460
taggagacgt acctggaaga ccaatgatat ccaacaaacc tgatacctta ctgaagacga      2520
tcgaacctgc ggattatctt gttttgttgg cctgtgacgg gatttctgac gtcttcaaca      2580
ctagtgattt gtacaatttg gttcaggctt ttgtcaatga atatgacgta gaaggtatca      2640
aactgatcgt ttttcacatc acaaaattct tgaattttcc agattatcac gaacttgcac      2700
gctacatttg caatcaagca gtttcagctg gaagtgctga caatgtgaca gtagttatag      2760
gtttcctccg tccaccagaa gacgtttggc gtgtaatgaa aacagactcg gatgatgaag      2820
agagcgagct cgaggaagaa gatgacaatg aatagtttat tgcaagtttt ccaaaacttt      2880
tccaatttcc ctgggtattg attagcatcc atatcttacg gcgattatat caattgtaac      2940
attatttctg tttctccccc cacctctcaa attttcaaat gacccttttt cttttcgtct      3000
acctgtatcg ttttccattc atctcccccc ctccactgtg gtatatcatt ttgtcattag      3060
aaagtattat tttgattttc attggcagta gaagacaaca ggatacagaa gaggttttca      3120
cag                                                                    3123
//